Publications

  • Articles
  • Book chapters
  • Patents
  • Invited Talks and Conference Presentations

Articles

      1. Mohammed Attia, Joanna Cao, Ruth Chan, Jian Ling, and Jing Yong Ye, Optical Properties of Indocyanine Green under Ultrasound Treatment, Journal of Photochemistry and Photobiology, 2, 100005 (2020).
      2. Mohammed Attia, Nicholas McMahon, Hao Li, Rui-Biao Lin, Frank DeLuna, Yanshu Shi, Banglin Chen, and Jing Yong Ye, “Novel route to size-controlled synthesis of MnFe2O4@MOF core-shell nanoparticles”, Journal of Solid State Chemistry, vol. 283, 121127 (2020).
      3. Binita Shrestha, Katerina Stojkova, Rich Yi, Mark A. Anastasio, Jing Yong Ye, Eric M. Brey, “Gold nanorods enable noninvasive longitudinal monitoring of hydrogels in vivo with photoacoustic tomography”, Acta Biomaterialia, Vol. 117, 374-383 (2020).
      4. Binita Shrestha, Frank DeLuna, Mark A Anastasio, Jing Yong Ye, Eric M Brey, “Photoacoustic Imaging in Tissue Engineering and Regenerative Medicine”, Tissue Eng. Part B Rev. 26, 79-102, (2020).
      5. Frank DeLuna, Nicholas McMahon, Mayeul Collot, and Jing Yong Ye “Calcium-sensitive photoacoustic probe for noninvasive extracellular calcium monitoring”, Proc. SPIE 11240, Photons Plus Ultrasound: Imaging and Sensing 2020, 1124018 1-6 (2020); DOI:10.1117/12.2545161
      6. Melissa Cadena, Frank DeLuna, Kwaku Baryeh, Lu-Zhe Sun, and Jing Yong Ye “Prostate cancer epithelial mesenchymal transition by TGF-β1 exposure monitored with a photonic crystal biosensor”, Proc. SPIE 11251, Label-free Biomedical Imaging and Sensing (LBIS) 2020, 1125126 1-8 (2020); DOI:10.1117/12.2544113
      7. Brandon D. Young, Mohammed Attia, Jing Yong Ye, Ruyan Guo & Amar S. Bhalla, Photoacoustic Behavior of CoFe2O4 and CoFe2O4-BaTiO3 Core-Shell Magnetoelectric Nanoparticles, Ferroelectrics, Vol.555, p.57-63 (2020), DOI:10.1080/00150193.2019.1691383.
      8. Chase Christenson, Kwaku Baryeh, Samad Ahadian, Rohollah Nasiri, Mehmet R. Dokmeci, Marcus Goudie, Ali Khademhosseini, and Jing Yong Ye “Enhancement of label-free biosensing of cardiac troponin I”, Proc. SPIE 11251, Label-free Biomedical Imaging and Sensing (LBIS) 2020, 112512J-8 (2020); DOI:10.1117/12.2546979
      9. Binita Shrestha, Frank DeLluna, Mark A. Anastasio, Jing Jong Ye, Eric M. Brey, “Photoacoustic Imaging in Tissue Engineering and Regenerative Medicine”, Tissue Engineering, vol. 26, 79-102 (2020).
      10. Frank DeLuna; Melissa Cadena; Bingzhi Wang; Lu-Zhe Sun; Jing Yong Ye, “Cellular refractive index comparison of various prostate cancer and noncancerous cell lines via photonic-crystal biosensor”, Proc. SPIE 10881, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XVII, 108810K 1-8 (2019); DOI: 10.1117/12.2507505
      11. Nestor Orlando Falcon, Sorush Ranjbar, Exal Cisneros, Bao Vu, Austin Schoppe, Pedro Sanchez, Yufang Jin, JingYong Ye, Yusheng Feng, Dharam Kaushik, and R. Lyle Hood “Innovative computer vision approach to 3D bladder model reconstruction from flexible cystoscopy”, Proc. SPIE 10852, Therapeutics and Diagnostics in Urology 2019, 10852071-9 (2019); DOI:10.1117/12.2510725
      12. Jonathan Scudder and Jing Yong Ye, “Limulus amoebocyte lysate test via an open-microcavity optical biosensor”, Journal of Biomedical Optics 23(2), 027001 (2018).
      13. Mahsa Lotfollahi Sohi, Masoumeh Gity, Jing Yong Ye, A.Mahlooji Far, “Segmentation of Breast Ultrasound Images Based on Active Contours using Neutrosophic Theory,” Journal of Medical Ultrasonics 45, 205-212 (2018).
      14. Frank DeLuna, XiaoFei Ding, Ismael Sagredo, Gilbert Bustamante, Lu-Zhe Sun, Jing Yong Ye, “Label-free in vitro prostate cancer cell detection via photonic-crystal biosensor”, Proc. SPIE, Biophysics, Biology and Biophotonics III: the Crossroads, Vol.10504, pp105040D 1-8 (2018); doi: 10.1117/12.2288019
      15. Gilbert Bustamante, Bingzhi Wang, Frank DeLuna, LuZhe Sun, Jing Yong Ye, “In-vivo fluorescence detection of breast cancer growth factor receptors by fiber-optic probe”, Proc. SPIE, Optical Biopsy XVI: Toward Real-Time Spectroscopic Imaging and Diagnosis, Vol.10489,104890E 1-11 (2018); doi: 10.1117/12.2290464
      16. Frank DeLuna, Yu Shrike Zhang, Gilbert Bustamante , Le Li, Mathew Lauderdale, Mehmet R. Dokmeci, Ali Khademhosseini, Jing Yong Ye, “Label-free detection of protein biomolecules secreted from a heart-on-a-chip model for drug cardiotoxicity evaluation “, Proc. SPIE, Frontiers in Biological Detection: From Nanosensors to Systems X, Vol.10510, pp 1051003-6 (2018); doi: 10.1117/12.2290399
      17. Gilbert Bustamante, Katherine Carrizales, Frank DeLuna, Nicolas Large, Jing Yong Ye, “Fabrication and characterization of thermo-responsive gold nanorod assemblies “, Proc. SPIE, Colloidal Nanoparticles for Biomedical Applications XIII, Vol. 10507, pp. 105070B 1-10 (2018); doi: 10.1117/12.2288554
      18. Kazuo Umemura, Shizuma Sato, Gilbert Bustamante, and Jing Yong Ye, “Using a fluorescence quenching method to detect DNA adsorption onto single-walled carbon nanotube surfaces”, Colloids and Surfaces B: Biointerfaces, 160, 201-206 (2017)
      19. Frank DeLuna, XiaoFei Ding, LuZhe Sun, Jing Yong Ye, “Evaluation of a novel label-free photonic-crystal biosensor imaging system for the detection of prostate cancer cells”, Proc. SPIE, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XV; Vol.10068, pp. 100681H 1-7 (2017). doi: 10.1117/12.2249630
      20. Corinne D. Nawn, Brian E. Souhan, Robert Carter III, Caitlin Kneapler, Nicholas Fell, Jing Yong Ye, “Distinguish tracheal and esophageal tissues with hyperspectral imaging and fiber-optic sensing,” Biomed. Opt. 21(11), 117004 (2016)
      21. Bailin Zhang, Bing Wang, Andres W. Morales, Jonathan Scudder, Madan K. Bhattacharyya, and Jing Yong Ye, “Study of the Interactions of Fusarium virguliforme Toxin FvTox1 with Synthetic Peptides by Molecular Simulations and a Label-Free Biosensor”, Analytical Chemistry 88, 3024-30 (2016).
      22. Andres W. Morales ; Yu S. Zhang ; Julio Aleman ; Parissa Alerasool ; Mehmet R. Dokmeci ; Ali Khademhosseini ; Jing Yong Ye, “Label-free detection of protein molecules secreted from an organ-on-a-chip model for drug toxicity assays”, Proc. SPIE, Frontiers in Biological Detection: From Nanosensors to Systems VIII, vol. 9725, pp. 972508 1-5 (2016); doi:10.1117/12.2212971
      23. Corinne D. Nawn ; Brian B. Souhan ; Robert Carter ; Caitlin Kneapler ; Nicholas F. Fell ; Jing Yong Ye, “Spectral characterization of tracheal and esophageal tissues using a hyperspectral camera and fiber optic sensors”, Proc. SPIE, Optical Fibers and Sensors for Medical Diagnostics and Treatment Applications XVI, Vol. 9702, pp. 970212 1-7 (2016); doi:10.1117/12.2211406
      24. He Huang, Gilbert Bustamante, Ralph Peterson, and Jing Yong Ye, “An adaptive filtered back-projection for photoacoustic image reconstruction”, Medical Physics 42, 2169-2178 (2015).
      25. Ralph W. Peterson, Kavya Kadugodinandareddy, Vinitha Karunakaran, Casey Whitney, Jian Ling, and Jing Yong Ye, “Utilizing an open-microcavity optoacoustic sensor for spectroscopic determination of methemoglobin concentration”, Proc. SPIE, Optical Tomography and Spectroscopy of Tissue XI, Vol. 9319, pp. 93191N 1-8 (2015)
      26. Bailin Zhang; Andres Morales, Ralph Peterson; Liang Tang, and Jing Yong Ye, “Label-free Detection of Cardiac Troponin I with a Photonic Crystal Biosensor”, Biosensors and Bioelectronics, 58C, 107-113 (2014).
      27. Ralph Peterson, Steven Solis, Bailin Zhang, He Huang, and Jing Yong Ye,“Sensitivity Enhancement of an Open Cavity Based Optoacoustic Sensor”, Optics Letters, Vol. 38, 2739-2741 (2013).
      28. Bailin Zhang, Juan Manuel Tamez-Vela, Steven Solis, Gilbert Bustamante, Ralph Peterson, Shafiqur Rahman, Andres Morales, Liang Tang and Jing Yong Ye, “Detection of Myoglobin with open-cavity and label-free photonic crystal biosensor”, Journal of Medical Engineering, 808056, 2013.
      29. Bailin Zhang, Chia-Yi Fang, Cheng-Chun Chang, Ralph Peterson, Saher Maswadi, Randolph D. Glickman, Huan-Cheng Chang, and Jing Yong Ye, “Photoacoustic Emission from Fluorescent Nanodiamonds Enhanced with Gold Nanoparticles”, Biomedical Optics Express 3, 1662–1629 (2012).
      30. Shatha Dallo, Bailin Zhang, James Denno, Soonbae Hong, Anyu Tsai, Williams Haskins, Jing Yong Ye, and Tao Weitao, “Association of Acinetobacter baumannii EF-Tu with cell surface, outer membrane vesicles and fibronectin”, the Scientific World Journal, Vol. 2012, 127805 (2012)
      31. Thommey P. Thomas, Yu-Chung Chang, Jing Yong Ye, Alina Kotlyar, Zhengyi Cao, Rameshwer Shukla, Suyang Qin, Theodore B. Norris, James R. Baker Jr., “Optical fiber-based in vivo quantification of growth factor receptors”, Cancer, 118, 2148-56 (2012).
      32. Yun Zhou, Kun Yang, Jianmin Cui, Jing Yong Ye, Cheri X. Deng, “Controlled permeation of cell membrane by single bubble acoustic cavitation”, J. of Controlled Release, 157, 103-111, (2012).
      33. Bailin Zhang, Shatha Dallo, Ralph Peterson, Syed Hussain, Tao Weitao, and Jing Yong Ye “Detection of anthrax lef with DNA-based photonic crystal sensors”, Journal of Biomedical Optics 16, 127006 (2011).
      34. Colin M. Chow, Yun Zhou, Yunbo Guo, Theodore Norris, Xueding Wang, Cheri Deng, and Jing Yong Ye, “Optical Ultrasound Sensor with a Unique Open-Cavity Structure”, Biomed. Opt.16, 017001 (2011).
      35. Christine Tse, Marwa J Zohdy, Jing Yong Ye, Matthew O’Donnell, Wojciech Lesniak and Lajos Balogh, “Enhanced optical breakdown in KB cells labeled with folate-targeted silver-dendrimer composite nanodevices”, Nanomed Nanotechnol Biol. Med., 7, 97-106 (2011)
      36. Yunbo Guo, Jing Yong Ye, Charles Divin, Baohua Huang, Thommey P. Thomas, James R. Baker, Jr. and Theodore B. Norris, “Real-Time Biomolecular Binding Detection Using a Sensitive Photonic Crystal Biosensor”, Anal. Chem., 82, 5211-5218 (2010).
      37. Yu-Chung Chang, Jing Yong Ye, Thommey P. Thomas, Zhengyi Cao, Alina Kotlyar, Eric R. Tkaczyk, James R. Baker, Jr. and Theodore B. Norris, “Fiber-optic multiphoton flow cytometry in whole blood and in vivo”, Journal of Biomedical Optics, 15, 047004 (2010).
      38. Eric R Tkaczyk, Alan H Tkaczyk, Koit Mauring, Jing Yong Ye, James R Baker and Theodore B Norris, “Quantitative differentiation of dyes with overlapping one-photon spectra by femtosecond pulse shaping”, Journal of Luminescence 130, 29-34 (2010).
      39. Guo, J. Y. Ye, B. Huang, D. McNerny, T. P. Thomas, J. R. Baker, Jr. and T. B. Norris, “Real-time small molecule binding detection using a label-free optical biosensor,” Proc. SPIE, Frontiers in Pathogen Detection: From Nanosensors to Systems. Edited by Fauchet, Philippe M.; Miller, Benjamin L. Volume 7553, pp. 755303 1-8 (2010).
      40. Kun Yang, Yun Zhou, Qiushi Ren, Jing Yong Ye, and Cheri X. Deng, “Dynamics of microbubble generation and trapping by self-focused femtosecond laser pulses”, Appl. Phys. Lett., 95, 051107 (2009).
      41. Eric R. Tkaczyk, Alan H. Tkaczyk, Koit Mauring, Jing Yong Ye, James R. Baker Jr. and Theodore B. Norris, “Control of Two-photon Fluorescence of Common Dyes and Conjugated Dyes”, Journal of Fluorescence, 19, 517-532 (2009).
      42. Guo, J. Y. Ye, C. Divin, T. P. Thomas, A. Myc, T. F. Bersano-Begey, J. J. R. Baker, and T. B. Norris, “Label-free biosensing using a photonic crystal structure in a total-internal-reflection geometry,” Proc. of SPIE, Vol. 7188, pp.71880B1-12 (2009).
      43. Yu-Chung Chang, Jing Yong Ye, Thommey P. Thomas, Zhengyi Cao, Alina Kotlyar, Eric R. Tkaczyk, James R. Baker, Jr., and Theodore B. Norris, “Two-photon in vivo flow cytometry using a fiber probe”, Proc. SPIE Vol. 7173, pp.71730I 1-10 (2009)
      44. Yunbo Guo, Charles Divin, Andrzej Myc, Fred L. Terry, Jr., James R. Baker, Jr., Theodore B. Norris, and Jing Yong Ye, “Sensitive molecular binding assay using a photonic crystal structure in total internal reflection”, Optics Express, Vol. 16, 11741-11749 (2008).
      45. Jing Yong Ye and Mitsuru Ishikawa, “Enhancing fluorescence detection with a photonic crystal structure in a total-internal-reflection configuration”, Optics Letters, Vol. 33, 1729-1731 (2008).
      46. Chang, J. Y. Ye, T. Thomas, Y. Chen, J. R. Baker, and T. B. Norris, “Two-photon fluorescence correlation spectroscopy through a dual-clad optical fiber,” Opt. Express 16, 12640-12649 (2008).
      47. Eric R. Tkaczyk, Cheng Frank Zhong, Jing Yong Ye, Andrzej Myc, Thommey Thomas, Zhengyi Cao, Raimon Duran-Struuck, Kathryn E. Luker, Gary D. Luker, Theodore B. Norris and James R. Baker Jr. “In vivo monitoring of multiple circulating cell populations using two-photon flow cytometry”, Optics Communication, 281, 888-894 (2008).
      48. Thommey P. Thomas, Jing Yong Ye, Yu-Chung Chang, Alina Kotlyar, Zhengyi Cao, Istvan J. Majoros, Theodore B. Norris and James R. Baker, Jr., “Investigation of tumor cell targeting of a dendrimer nanoparticle using a double-clad optical fiber probe”, Journal of Biomedical Optics, 13, 014024 (2008).
      49. Cheng Frank Zhong, Eric R. Tkaczyk, Jing Yong Ye, Andrzej Myc, Thommey Thomas, Zhengyi Cao, Raimon Duran-Struuck, Kathryn E. Luker, Gary D. Luker, Theodore B. Norris and James R. Baker, Jr. “Quantitative Two-Photon Flow Cytometry – in Vitro and in Vivo”, Journal of Biomedical Optics, Vol.13, 034008 (2008).
      50. Christine Tse, Marwa J. Zohdy, Jing Yong Ye, and Matthew O’Donnell, “Precision and penetration depth limitations of subsurface photodisruption in porcine skin tissue with infrared femtosecond laser pulses”, IEEE Transactions on Biomedical Engineering, 55, 1211 – 1218 (2008).
      51. Eric R. Tkaczyk, Koit Mauring, Alan H Tkaczyk, Veera Krasnenko, Jing Yong Ye, James R Baker, Jr., and Theodore B Norris, “Control of the blue fluorescent protein with advanced evolutionary pulse shaping”, Biochemical and Biophysical Research Communications 376, 733-7 (2008).
      52. Eric R. Tkaczyk, Alan H Tkaczyk, Steve Katnik, Jing Yong Ye, Kathryn Luker, Gary Luker, Andrzej Myc, James R. Baker, Jr., and Theodore B. Norris, “Extended Cavity Laser Enhanced Two-Photon Flow Cytometry”, Journal of Biomedical Optics, 13, 041319 (2008).
      53. Thommey P. Thomas, Rameshwar Shukla, Alina Kotlyar, Bradley Liang, Jing Yong Ye, Theodore B. Norris and James R. Baker, Jr. “Dendrimer−Epidermal Growth Factor Conjugate Displays Superagonist Activity”, Biomacromolecules 9, 603–609 (2008).
      54. Y. Ye, C. J. Divin, J. R. Baker, and T. B. Norris, “Whole spectrum fluorescence detection with ultrafast white light excitation,” Opt. Express 15, 10439-10445 (2007)
      55. Eric R. Tkaczyk; Cheng Frank Zhong; Jing Yong Ye; Steve Katnik; Andrzej Myc; Thommey Thomas; Kathryn E. Luker; Gary D. Luker; James R. Baker, Jr.; Theodore B. Norris, “Two-photon, two-color in vivo flow cytometry to noninvasively monitor multiple circulating cell lines”, Proc. of SPIE on Novel Optical Instrumentation for Biomedical Applications III, Vol. 6631, pp.66310T 1-12 (2007)
      56. Christine Tse, Wojciech Lesniak, Lajos P. Balogh, Jing Yong Ye, and Matthew O’Donnell, “Metal/Dendrimer Nanocomposites for Enhanced Optical Breakdown: Acoustic Characterization and Initial Targeted Cell Uptake Study”, Proc. of SPIE on Genetically Engineered and Optical Probes for Biomedical Applications IV, Vol. 6449, pp.64490C 1-10 (2007).
      57. J. Zohdy, C. Tse, J.Y. Ye, M. O’Donnell, “Acoustic estimation of thermal distribution in the vicinity of femtosecond laser-induced optical breakdown,” IEEE Transactions on Biomedical Engineering, 53, 2347-2355 (2006).
      58. Marwa J. Zohdy, Christine Tse, Jing Yong Ye, and Matthew O’Donnell, “Optical and acoustic detection of laser-generated microbubbles in single cells”, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 53, 117-125 (2006).
      59. Eric R. Tkaczyk, Augustin Mignot, Jing Yong Ye, Theodore B. Norris, “Increasing two-photon fluorescence signals by coherent control”, Proceedings of SPIE on Multiphoton Microscopy in the Biomedical Sciences VI, Vol. 6089, pp.608910-1-10 (2006).
      60. Thommey Thomas, Jing Yong Ye, Istvan Majoros, Alina Kotlyar, Zhengyi Cao, James Baker Jr. and Theodore B. Norris, “Real-time fluorescence measurement of a tumor-targeted nanodevice by a two-photon optical fiber fluorescence probe”, Proceedings of SPIE on Nano/Biophotonics and Biomedical Applications III, Vol. 6095, pp.60950Q1-7 (2006).
      61. Christine Tse, Marwa J. Zohdy, Jing Yong Ye, and Matthew O’Donnell, “Subsurface photodisruption in pig skin as monitored by high-frequency ultrasound”, Proceedings of SPIE on Photons Plus Ultrasound Imaging and Sensing Vol. 6086, pp. 1-9 (2006).
      62. Christine Tse, Marwa J. Zohdy, Jing Yong Ye, Theodore B. Norris, Lajos P. Balogh, Kyle W. Hollman, and Matthew O’Donnell, “Acoustic Detection of Controlled Laser-Induced Microbubble Creation in Gelatin”, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 52, 1962-1969 (2005).
      63. J. Zohdy, C. Tse, J.Y. Ye, L.P. Balogh, T.B. Norris, M. O’Donnell, “Optical and acoustical monitoring of femtosecond laser-induced intracellular contrast agents: Initial cell culture studies,” SPIE, Vol. 5697, 291-300 (2005).
      64. Zhong CF, Ye JY, Myc A, Thomas TP, Bielinska AU, Baker JR Jr., Norris TB. “Two-photon Flow Cytometry”. SPIE, Vol. 5700, 78-89 (2005).
      65. Y. Ye, M. T. Myaing, T. P. Thomas, I. Majoros, A. Koltyar, J. R. Baker, Jr., W. J. Wadsworth, G. Bouwmans, J.C. Knight, P.St.J. Russell, and T. B. Norris, “Development of a dual-clad photonic-crystal-fiber based scanning microscope”, Multiphoton Microscopy in the Biomedical Sciences V, edited by Ammasi Periasamy Proceedings of SPIE Vol. 5700, 23-27 (2005).
      66. Jing Yong Ye, Christine Tse, Marwa J. Zohdy, Guoqing Chang, Kyle W. Hollman, Matthew O’Donnell, James R. Baker, Jr., Theodore B. Norris, “Trapping cavitation bubbles with a self-focused laser beam”, Opt. Lett., 29, 2136-2138 (2004)
      67. Thommey P. Thomas, Anil K. Patri, Andrzej Myc, Mon Thiri Myaing, Jing Yong Ye, Theodore B. Norris, and James R. Baker Jr., “In Vitro Targeting of Synthesized Antibody-Conjugated Dendrimer Nanoparticles”, Biomacromolecules 5, 2269-2274 (2004).
      68. Thomas, M. T. Myaing, J. Y. Ye, K. Candido, A. Kotlyar, J. Beals, P. Cao, B. Keszler, A. Patri, T. B. Norris, J. Baker, Jr. “Detection and analysis of tumor fluorescence using a two-photon optical fiber probe”, Biophysics Journal, 86, 3959 (2004).
      69. Christine Tse, Marwa Zohdy, Jing Yong Ye, Theodore B. Norris, Lajos Balogh, Kyle Hollman, and Matthew O’Donnell, “Acoustic detection of controlled LIOB bubble creation in tissue-mimicking gelatin phantoms”, Proceedings of the 2004 IEEE Ultrasonics Symposium, pp. 350-353 (2004).
      70. O’Donnell, C. Tse, M. Zohdy, T. Erpelding, K. Hollman, J.Y. Ye, T.B. Norris, and L. Balogh, “Combined Ultrasonic Microscopy and Ultrafast Optics for Molecular Imaging and Therapy”, Proceedings of the 2004 IEEE Ultrasonics Symposium, pp. 354-363 (2004).
      71. J. Zohdy, C. Tse, J.Y. Ye, M. O’Donnell, “Combined optical and ultrasonic monitoring of laser-generated intracellular contrast agents: initial cell culture studies”, Proceedings of the 2004 IEEE Ultrasonics Symposium, 1098-1101 (2004).
      72. Tse C, Zhody M, Ye JY, Norris TB, Balogh L, Hollman K, and O’Donnell M., “Monitoring LIOB-induced bubble characteristics in gelatin using high-frequency ultrasound”, SPIE Proceedings of the 2004 Conference on Medical Imaging 5373, 242-249 (2004).
      73. Myaing MT, Ye JY, Norris TB, Thomas TP, Baker Jr. JR, Wadsworth WJ, Bouwmans G, Knight JC, Russell P.St.J., “Two-photon fluorescence biosensing with conventional and photonic crystal fibers”, Optical fibers and sensors for medical applications IV, SPIE, vol. 5317, 151-157 (2004).
      74. Mon Thiri Myaing, Jing Yong Ye, Theodore B. Norris, T. Thomas, A. Kotylar, A. Patri J. Baker, Jr. W.J. Wadsworth, R.M. Percival, G. Bouwmans, J.C. Knight, and P.St.J. Russell, “Enhanced Two-photon Biosensing with Double-Clad Photonic Crystal Fibers”, Opt. Lett., 28, 1224 (2003).
      75. P. Biju, J.Y. Ye, and M. Ishikawa, “Spatial heterogeneity in a polymer thin film probed by single molecules”, J. Phys. Chem. B107, 10729-10735 (2003).
      76. M. Milas, J. Y. Ye, T. B. Norris, L. P. Balogh, J. R. Baker, Jr., K. W. Hollman, S. Emelianov, M. O’Donnell, “Acoustic Characterization of Enhanced Laser-Induced Optical Breakdown Using Silver/Dendrimer Nanocomposites”, Appl. Phys. Lett. 82, 994 (2003).
      77. M. Milas, J. Y. Ye, T. B. Norris, K. W. Hollman, S. Emelianov, M. O’Donnell, “Acoustic Characterization of Microbubble Dynamics in Laser-Induced Optical Breakdown”, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 50, 517 (2003).
      78. Zhody MJ, Tse C, Ye JY, and O’Donnell M, “An ultrasonic method to measure effective temperature in the vicinity of laser-induce optical breakdown”, Proceedings of the 2003 IEEE Ultrasonics Symposium, pp. 1103-1106 (2003).
      79. Y. Ye, M. T. Myaing, T. B. Norris, T. Thomas and J. Baker Jr., “Biosensing based on two-photon fluorescence measurements through optical fibers”, Opt. Lett. 27, 1412 (2002).
      80. Mitsuru Ishikawa, Yoshihiro Maruyama, Jing Yong Ye and Masayuki Futamata, “Single-molecule imaging and spectroscopy of adenine and an analog of adenine using surface-enhanced Raman scattering and fluorescence”, J. Luminescence 98, 81 (2002)
      81. Ishikawa M, Maruyama Y, Ye JY, Futamata M, “Single-molecule imaging and spectroscopy using fluorescence and surface-enhanced Raman scattering”, J. Bio. Phys. 28, 573-585 (2002)
      82. Inouye, M. Arakawa, J. Y. Ye; T. Hattori, H. Nakatsuka, K. Hirao, “Optical properties of a total-reflection-type one-dimensional photonic crystal”, IEEE J. Quantum Electronics 38, 867 (2002)
      83. Y. Ye, L. Balogh, and T. B. Norris, “Enhancement of Laser-Induced Breakdown Using Metal/Dendrimer Nanocomposites”, Appl. Phys. Lett. 80, 1713 (2002).
      84. Sherman, J. Y. Ye, O. Albert, and T. B. Norris, “Adaptive Correction of Depth Induced Aberrations in Multiphoton Confocal Microscopy using a Deformable Mirror”, J. Microscopy 206, 65 (2002).
      85. O’Donnell M, Milas SM, Ye JY, Norris TB, Balogh LP, Baker JR, Hollman K, Emelianov SY, “Acoustic detection of laser induced optical breakdown in dendrimer nanocomposites: Implications for site targeted molecular diagnostics and therapeutics”, IEEE Ultrasonic symposium proceedings, Vol. 2, 1961 – 1964 (2002).
      86. Yogi, T. Kawakami, M. Yamauchi, J. Y. Ye, and M. Ishikawa, “On-Demand Droplet Spotter for Preparing Pico-to Femtoliter Droplets on Surfaces”, Anal. Chem. 73, 1896 (2001).
      87. Y. Ye, K. Umemura, M. Ishikawa, and R. Kuroda, “Atomic Force Microscopy of DNA Molecules Stretched by Spin-Coating Technique”, Anal. Biochem. 281, 21 (2000).
      88. Y. Ye, Y. Yamane, M. Yamauchi, H. Nakatsuka, and M. Ishikawa, “Direct Observation of Interactions of Single Fluorescent Nucleotide Analogue Molecules with DNA Polymerase I”, Chem. Phys. Lett. 320, 607 (2000).
      89. Y. Ye, Y. Yamane, O. Yogi, N. Tsurumachi, H. Nakatsuka, and M. Ishikawa, “Enhancement of Two-Photon Excited Fluorescence Using One-Dimensional Photonic Crystals”, Appl. Phys. Lett. 75, 3605 (1999).
      90. Yamauchi, J. Y. Ye, O. Yogi, and M. Ishikawa, “Excitation-Polarization Effects on Single-Molecule Fluorescence on Quartz Surfaces”, Chem. Lett. 28, 735 (1999).
      91. Ishikawa, J. Y. Ye, Y. Maruyama, and H. Nakatsuka, “Triphenylmethane Dyes Revealing Heterogeneity of their nanoenvironment: Femtosecond, Picosecond, and Single-Molecule Studies”, J. Phys. Chem. A 103, 4319 (1999).
      92. Y. Ye, M. Yamauchi, O. Yogi, and M. Ishikawa, “Spectroscopic Properties of 2′-(or-3′)-O-(2, 4, 6-Trinitrophenyl) Adenosine 5′-Triphosphate Revealed by Time-Resolved Fluorescence Spectroscopy”, J. Phys. Chem. B 103, 2812 (1999).
      93. Ishikawa, O. Yogi, J. Y. Ye, and T. Yasuda, “Grouping of independent single molecules on silicon surfaces”, Anal. Chem. 70, 5198 (1998).
      94. Y. Ye, M. Ishikawa, O. Yogi, T. Okada, and Y. Maruyama, “Bimodal Site Distribution of a Polymer Film Revealed by Flexible Single-Molecule Probes”, Chem. Phys. Lett. 288, 885 (1998).
      95. Yogi, M. Ishikawa, J. Y. Ye, M. Yamauchi, and T. Kawakami, “Development of a Droplet Generator for Single-Molecule Fluorescence Imaging”, Technical Report of IEICE, OME98-83, 85 (1998).
      96. Y. Ye, T. Hattori, H. Nakatsuka, Y. Maruyama, and M. Ishikawa, “Microscopic Dynamics of Glass Transition Investigated by Time-Resolved Fluorescence Measurements of Doped Chromophores”, Phys. Rev. B 56, 5286 (1997).
      97. Nakatsuka, J. Y. Ye, T. Hattori, Y. Maruyama and M.Ishikawa, “Microscopic Study of Glass Transition: Time-Resolved Fluorescence Measurements of Doped Dye Molecules”, Prog. Theor. Phys., suppl. 126, 433 (1997).
      98. Y. Ye, T. Hattori, H. Inouye, H. Ueta, H. Nakatsuka, Y. Maruyama, and M. Ishikawa, “Glass Transition of Associated Solvents Studied by Fluorescence Measurement of Doped Chromophores”, Phys. Rev. B 53, 8349 (1996).
      99. M. Abedin, J. Y. Ye, H. Inouye, T. Hattori, H. Sumi and H. Nakatsuka, “Diffusive Torsional Dynamics of Malachite Green Molecules in Solid Matrices Probed by Fluorescence Decay”, J. Chem. Phys. 103, 6414 (1995).
      100. M. Abedin, J. Y. Ye, H. Inouye, T. Hattori, and H. Nakatsuka, “Local Dynamics in Solid Matrices Investigated by Malachite Green Optical Microprobes”, J. Luminescence 64, 135 (1995).
      101. Y. Ye, M. S. Zhan and S. K. Zhou, “Gain Due to Level-Dependent Collisions”, Phys. Rev. A 48, 2256 (1993).
      102. Y. Ye, M. S. Zhan and S. K. Zhou, “Light Amplification by the Effect of Velocity Redistribution of Particles due to the Level Dependence of Collision Cross Sections”, Phys. Lett. A 166, 352 (1992)
      103. Y. Ye, L. S. Yang and Y. Q. Lu, “Rate Equation Theory of Light-Induced Drift”, The Chinese Journal of Atom and Mol. Phys. 9, 2125 (1992).
      104. Y. Ye, M. S. Zhan, and S. K. Zhou, “A New Model on Light Amplification without Population Inversion”, The Chinese Journal of Quantum Electronics, 9, 65 (1992).
      105. Y. Ye, M. S. Zhan, and S. K. Zhou, “Light Gain without Population Inversion due to the Level Dependence of Collision Cross Sections”, SPIE-Int. Soc. Opt. Eng. 1726, 532 (1992).
      106. Y. Ye, L. S. Yang, and Y. Q. Lu, “Calculation of Velocity of Light-Induced Drift”, The Chinese Journal of Laser and Infrared, 20, 17 (1990).

Book Chapters

  • Kwaku Baryeh, Mohammed Attia, Joshua Chaj Ulloa, Jing Yong Ye, “MAGNETIC NANOPARTICLES BASED HYBRID MATERIALS IN THE BIOMEDICAL FIELD: FUNDAMENTALS AND APPLICATIONS” in “Magnetic Nanoparticle-based Hybrid Materials”, Elsevier, 2021, ISBN# 9780128236895
  • J. Y. Ye and T. Norris, “Optical and Biophotonic Applications of Dendrimers Conjugates”, A book chapter in “DENDRIMER-BASED NANOMEDICINE”, edited by Istvan Majoros & James Baker, Jr. (World Scientific, 2008).
  • M. Ishikawa and J. Y. Ye, “Probing Nanoenvironments Using Functional Chromophores” A book chapter in “Molecular and Supramolecular Photochemistry”, vol. 7 “Sensors and Optical Switching Phenomena”, eds. V. Ramamurthy and K. S. Schanze, (CRC press, 2003).

Patents

    1. J. Y. Ye and M. Ishikawa, “Light enhancement method and device, and their applications in fluorescence detection”, Patent: JP 2001-242083, Japan, Application date: 3/1/2000, Publication date: 9/7/2001
    2. J. Y. Ye, T. B. Norris, L. P. Balogh, J. R. Baker, Jr., “Laser-based method and system for enhancing optical breakdown”, Patent filed in 2002, Issued on Jan. 6, 2009, Patent No. 7,474,919 B2
    3. M. O’Donnell, J. Y. Ye, T. B. Norris, L. P. Balogh, J. R. Baker, Jr., S. M. Milas, K. W. Hollman, S. Emelianov, Acoustic monitoring method and system in laser-induced optical breakdown, Patent filed in August, 2002, Issued on May 6, 2008, Patent No. 7,367,948.
    4. J. Y. Ye, T. B. Norris, M. T. Myaing, T. Thomas, J. R. Baker, Jr., Enhancing Fiber-Optic Sensing Technique Using a Dual-Core Fiber, Patent filed in December, 2002, Issued on May 16, 2006, Patent No. 7,046,888
    5. J. Y. Ye, T. B. Norris, M. T. Myaing, T. Thomas, J. R. Baker, Jr., Enhancing Fiber-Optic Sensing Technique Using a Dual-Core Fiber, Filed on March 9, 2006, Issued on June 26, 2007, Patent No. 7,236,673
    6. J. Y. Ye, and T. B. Norris, Double-Clad-Fiber Scanning Microscope, Patent filed on May 29, 2003, Converted to utility patent application, Serial No. 10/566,620, Issued on April 22, 2008, Patent No. 7,362,500.
    7. J. Y. Ye, T. B. Norris, F. Zhong, and J. R. Baker, Jr., Quantitative two-photon flow cytometry, US patent filed on April 4, 2008, Issued on July 16, 2013, Patent No. 8,486,371.
    8. J. Y. Ye, T. B. Norris, and J. R. Baker, Jr., Whole spectrum fluorescence detection with ultrafast white light excitation, Patent filed on February 18, 2005, Issued on Oct. 2. 2007, Patent No. 7,277,169
    9. J. Y. Ye, Y. Guo, T. B. Norris, and J. R. Baker, Jr., Novel Photonic Crystal Sensor, Patent filed on July 25, 2006, Serial No. 60/833,101, Issued on Dec. 29, 2009. Patent No. 7,639,362
    10. J. Y. Ye, J. Gestwicki, T. B. Norris, and J. R. Baker, Jr., and T. Bersono-Begey, Analytical system with photonic crystal sensor, Patent filed on Nov. 11, 2009, Issued on July 30, 2013, Patent No. 8,497,992
    11. Kenn Oldham, Thomas D. Wang, Zhongyao Liu, and Jing Yong Ye, Two-Photon Endoscopic Scanning Assembly for Inflammatory Disease Detection, Filed on January 23, 2012, Issued on Aug. 19, 2014, Patent No. 8,807,801.
    12. He Huang and Jing Yong Ye, Backprojection Approach for Photoacoustic Image Reconstruction, filed on Dec. 19, 2013. Issued on December 18, 2018, Patent No. 10,157,483
    13. Jing Yong Ye and Corinne Nawn, Thermochromic Optical Waveguide Temperature Sensors, Patent filed on 1/12/2017. Issued on 11/24/2020, U.S. Patent No.10,842,384
    14. Jing Yong Ye and Jonathan Scudder, Limulus Amoebocyte Lysate Assay and Method of Same, Filing date 10/17/2017, Serial Number is 62/573,535. Converted to utility patent application on 10/16/2018, Serial No. 16/162,261
    15. Sorush Ranjbar, Robert Lyle Hood, Bao Huy Vu, Yusheng Feng, and Jing Yong Ye, 3D Image Reconstruction of The Bladder From Videos Obtained By Flexible Cystoscopy. Filing date: 2/1/2019, Serial Number: 62/799,984

Scholarly Presentations

  • Invited Talks
  • Jing Yong Ye, “Development of Photoacoustic Spectroscopy and Tomography for Potential Applications in TERM”, The 8th annual conference of TERMIS-AM, Charlotte, North Carolina, Dec. 3, 2017.
  • Jing Yong Ye, “Sensitive optical biosensing in vitro and in vivo”, Huazhong University of Science and Technology, Wuhan, China, June 15, 2017.
  • Jing Yong Ye, “Sensitive Optical Biosensing Technologies for Biomedical Applications”, Tsinghua University, Beijing, China, June 22, 2017.
  • Jing Yong Ye, “Develop novel optical biosensors for sensitive in vitro and in vivo bioassays”, Florida International University, Miami, Sept. 30, 2016
  • Jing Yong Ye, “Biosensing with Novel Photonics Technologies”, Tokyo University of Science, Japan, Jan. 6, 2016.
  • Jing Yong Ye, “Accurate detection of prostate cancer via a label-free imaging system”, American Chemical Society, 72nd Annual SWRM Meeting, Galveston, TX, November 10-13, 2016.
  • Jing Yong Ye, “Development of a Photonic Crystal Sensor for Label-free Bioassays”, San Antonio Nanotechnology Forum, San Antonio, Nov. 25, 2015
  • Jing Yong Ye, “Novel Photonics Technologies for Biomedical Applications”, Southwest University, China, May 28, 2015
  • Jing Yong Ye, “Novel Photonics Technologies for Sensitive Biosensing and Imaging”, Oregon State University, April 16, 2014.
  • Jing Yong Ye, Ralph Peterson, He Huang, and Gilbert Bustamante, “Optoacoustic Sensor and New Backprojection Algorithm for Photoacoustic Imaging”, TomoWave Laboratories, March 12, 2014.
  • He Huang, Gilbert Bustamante, Ralph Peterson, and Jing Yong Ye, “A Precise Time-Domain Backprojection Approach for Photoacoustic Image Reconstruction”, SiViRT Center, University of Texas at San Antonio, March 31, 2014.
  • Jing Yong Ye, Enhanced Biosensing and Ultrafast Laser Interaction with Nanoparticle Targeted Cancer Cells, Chongqing University, China, May 28, 2013.
  • Jing Yong Ye, Novel Photonics Technologies for Biomedical Applications, Peking University, Beijing China, May 21, 2013.
  • Jing Yong Ye, Development of novel optical biosensors for real-time, in vitro and in vivo bioassays, invited talk at University of Illinois at Chicago on April 20, 2012
  • Jing Yong Ye, Bailin Zhang, Ralph Peterson, Yu-Chung Chang, Thommey P. Thomas, Zhengyi Cao, Alina Kotlyar, Eric R. Tkaczyk, James R. Baker, Jr. and Theodore B. Norris, “Two-Photon Optical Fiber Fluorescence Biosensing”, the 5th Advanced Optical Methods Workshop, Shenzhen, May 9 – 11, 2012
  • Jing Yong Ye, Label Free Optical Biosensing and Optical Breakdown of Nanoparticle Targeted Cancer Cells, Chongqing University of Technology, China, July 6, 2010.
  • Jing Yong Ye, Enhanced Biosensing and Ultrafast Laser Interaction with Multifunctional Nanoparticles, Drexel University, March 11, 2009.
  • Jing Yong Ye, Photonic Crystal Biosensing and Ultrafast Laser Interaction with Nanoparticle Targeted Cancer Cells, Yale University, March 29, 2008.
  • Jing Yong Ye, Enhanced Biosensing and Ultrafast Laser Interaction with Multifunctional Nanoparticles, University of Utah, September 26, 2008.
  • Jing Yong Ye, Christine Tse, Marwa J. Zohdy, Theodore B. Norris, and Matthew O’Donnell, “Nanoparticle Enhanced Optical Breakdown and Microbubble Generation”, The Fifth Annual Ann Arbor Symposium on Relativistic and Sub-Relativistic Intensity Lasers and Their Applications, October 25-26, 2006.
  • Jing Yong Ye, Optical Breakdown in Nanoparticle Targeted Cancer Cells and Two-photon Optical Fiber Fluorescence Probe, Shanghai Jiaotong University, China, June 7, 2006
  • Jing Yong Ye and T. B. Norris, Reducing laser-induced optical breakdown threshold with metal nanoparticles, Symposium on Femtosecond Laser micromachining: Applications in Engineering, Bioengineering and Surgery, Ann Arbor, MI, May 2, 2002.
  • J. Y. Ye, L. Sherman, O. Albert, and T. B. Norris, Adaptive correction for aberrations in scanning multiphoton confocal microscopy, The Ann Arbor Section Meeting of Optical Society of American, Ann Arbor, Michigan, Feb. 26, 2001.
  • T. B. Norris, L. Sherman, O. Albert, and J. Y. Ye, Adaptive optics for multiphoton confocal microscopy, The Optical Society of American 2000 Annual meeting, Providence, Rhode Island, Oct. 22-26, 2000.
  • J. Y. Ye, Heterogeneity of Nanoenvironment Revealed by Triphenylmethane Dyes: Time-Resolved Spectroscopy and Single-Molecule Imaging, The 1st International Symposium for Chinese Youth Scientists on Atomic and Molecular Physics, Wuhan, China, September 21-24, 1999.
  • J. Y. Ye, and M. Ishikawa, Single-Molecule Fluorescence Imaging and Time-Resolved Spectroscopy of a Site-Sensitive Dye Molecule, The JRCAT Workshop on Technology for Identifying & Manipulation Atoms & Molecules, Tsukuba, January. 12-14, 1999.
  • J. Y. Ye, Single-Molecule Fluorescence Imaging and Time-Resolved Spectroscopy, The 102th Symposium on the Development of Nanotechnology and Its Applications to Physics, Tokyo, January. 19, 1999.
  • Conference Presentations
  1. Frank DeLuna, Nicholas McMahon, Mayeul Collot, and Jing Yong Ye, “Calcium-sensitive photoacoustic probe for noninvasive extracellular calcium monitoring”, Photonics West, 1-6 Feb 2020, San Francisco, CA
  2. Melissa Cadena, Frank DeLuna, Kwaku Baryeh, Lu-Zhe Sun, and Jing Yong Ye, “Prostate cancer epithelial mesenchymal transition by TGF-β1 exposure monitored with a photonic crystal biosensor”, Photonics West, 1-6 Feb 2020, San Francisco, CA
  3. Chase Christenson, Kwaku Baryeh, Samad Ahadian, Rohollah Nasiri, Mehmet R.
  4. Dokmeci, Marcus Goudie, Ali Khademhosseini, and Jing Yong Ye “Enhancement of label-free biosensing of cardiac troponin I”, Photonics West, 1-6 Feb 2020, San Francisco, CA
  5. Shawn R. Gray, JingYong Ye, and Martin Paukert, Vigilance-dependent integration of sensory information by astrocytes, Gordon Research Conferences, Ventura, CA, March 3-8, 2019
  6. Jing Yong Ye (Invited talk), Imaging and biosensing techniques for brain research, The 1st Brain Health Consortium Investigator’s Workshop – January 8th 2019.
  7. Frank DeLuna; Melissa Cadena; Bingzhi Wang; Lu-Zhe Sun; Jing Yong Ye, “Cellular refractive index comparison of various prostate cancer and noncancerous cell lines via photonic-crystal biosensor”, Photonics West BIOS conference, San Francisco, California, February 2 – 7, 2019.
  8. Nestor Orlando Falcon, Sorush Ranjbar, Exal Cisneros, Bao Vu, Austin Schoppe, Pedro Sanchez, Yufang Jin, JingYong Ye, Yusheng Feng, Dharam Kaushik, and R. Lyle Hood “Innovative computer vision approach to 3D bladder model reconstruction from flexible cystoscopy”, Photonics West BIOS conference, San Francisco, California, February 2 – 7, 2019.
  9. Melissa Cadena, Frank DeLuna, Bingzhi Wang, Lu-Zhe Sun, Jing Yong Ye, Label-free Detection of Prostate Cancer Cells via a Photonic Crystal Biosensor, The BME Annual Research Symposium, San Antonio, March 27th, 2019.
  10. Mohammed Attia, Nicholas McMahon, Hoa Li, Frank DeLuna, Banglin Chen, Gabriela Romero, Jing Yong Ye, Novel route to synthesize MnFe2O4@MOF core-shell nanoparticles with size controlled, The BME Annual Research Symposium, San Antonio, March 27th, 2019.
  11. Euchgoebjnai Cyriaque, Mohammed Attia, Frank DeLuna, and Jing Yong Ye, Cellular Uptake of an MnFe2O4@MIL-88b core-shell nMOF Drug Delivery System, ABRCMS, California, November 13-16, 2019.
  12. Frank DeLuna, XiaoFei Ding, Ismael Sagredo, Gilbert Bustamante, Lu-Zhe Sun, Jing Yong Ye, “Label-free in vitro prostate cancer cell detection via photonic-crystal biosensor”, SPIE Photonics West, San Francisco, California, January 27 – February 1, 2018.
  13. Gilbert Bustamante, Bingzhi Wang, Frank DeLuna, LuZhe Sun, Jing Yong Ye, “In-vivo fluorescence detection of breast cancer growth factor receptors by fiber-optic probe”, SPIE Photonics West, San Francisco, California, January 27 – February 1, 2018.
  14. Frank DeLuna, Yu Shrike Zhang, Gilbert Bustamante , Le Li, Mathew Lauderdale, Mehmet R. Dokmeci, Ali Khademhosseini, Jing Yong Ye, “Label-free detection of protein biomolecules secreted from a heart-on-a-chip model for drug cardiotoxicity evaluation “, SPIE Photonics West, San Francisco, California, January 27 – February 1, 2018.
  15. Gilbert Bustamante, Katherine Carrizales, Frank DeLuna, Nicolas Large, Jing Yong Ye, “Fabrication and characterization of thermo-responsive gold nanorod assemblies “, SPIE Photonics West, San Francisco, California, January 27 – February 1, 2018.
  16. Frank DeLuna, XiaoFei Ding, LuZhe Sun, Jing Yong Ye, “Prostate Cancer Detection via novel Label-Free Imaging System based on a Photonic-Crystal Biosensor”, SPIE Photonics West, San Francisco, California, Jan. 28- Feb. 2, 2017.
  17. Shizuma Sato, Gilbert Bustamante, Jing Yong Ye, Kazuo Umemura, “Observation of Adsorption Process of Single Stranded DNA to Single-Walled Carbon Nanotubes Surfaces by Fluorescence Quenching”, The 61st Annual Meeting of the Biophysical Society. New Orleans, Louisiana, February 11-15, 2017.
  18. Ryan Rose, Andrew Li, Anthony Botting, Gilbert Bustamante, Frank DeLuna, Erin Pollet and Jing Yong Ye, “Novel Method for Oximetry Using Dual-Wavelength Imaging on the Bulbar Conjunctiva and Episcleral Microvasculature”, The 4th Annual CIMA-LSAMP Symposium, San Antonio, Aug. 3, 2017.
  19. Erin Pollet, Ruibiao Lin, Frank DeLuna, Banglin Chen, Jing Yong Ye, “Metal-Organic Framework as Nanoscale Drug Carrier to Cross the Blood Brain Barrier”, UTSA COS Research Conference, Oct. 5, 2017
  20. Ismael Sagredo, Frank DeLuna, XiaoFei Ding, Gilbert Bustamante, LuZhe Sun, Jing Yong Ye, “In vitro detection of prostate cancer cells undergoing epithelial-mesenchymal transition via photonic crystal biosensor”, UTSA COS Research Conference, Oct. 5, 2017
  21. Shizuma Sato, Gilbert Bustamante, Kazuo Umemura, Jing Yong Ye, “Monitoring adsorption process of single stranded DNA to single-walled carbon nanotubes surfaces by fluorescence quenching”, The 54th Annual Meeting of the Biophysical Society of Japan, Tsukuba, Japan, November 24-27, 2016.
  22. Katherine Carrizales, Gilbert Bustamante, and Jing Yong Ye, “Synthesis and Characterization of Polymer-Coupled Gold Nanorods”, BMES Annual Meeting, Minneapolis, Minnesota, Oct. 5-8, 2016
  23. Corinne D. Nawn, Megan B. Blackburn, Brian E. Souhan, Caitlin Kneapler, Nicholas Fell, Jing Yong Ye, Robert Carter III, “Spectral characterization of tracheal and esophageal tissues”, Military Health System Research Symposium, in Orlando, Florida, August 15-18, 2016
  24. Katherine Carrizales, Gilbert Bustamante, Jing Yong Ye, “Assembly of Polymer Linked Gold Nanorods”, Annual Biomedical Research Conference for Minority Students, Tampa, Florida, Nov. 9 – 12, 2016.
  25. Kavya Kadugodinandareddy, Vinitha Karunakaran, Gilbert Bustamante, and Jing Yong Ye, “Optimizing Optoacoustic Sensors Utilizing Different Cavity Materials of a Photonic Crystal Structure”, BMES San Antonio Symposium, March 5, 2016.
  26. Mahsa Lotfollahi Sohi, A.Mahlooji Far, Masoumeh Gity, Jing Yong Ye, “Indeterminacy Exploited in an Active Contour Modal for Segmentation of Breast Ultrasound Images”, BMES San Antonio Symposium, March 5, 2016.
  27. Frank DeLuna, XiaoFei Ding, Lu-Zhe Sun, Jing Yong Ye, “Quantifying the Dynamic changes of the Cell Membrane of Prostate Epithelial Cell Lines via Photonic-Crystal Biosensor”, Annual Biomedical Research Conference for Minority Students, Tampa, Florida, Nov. 9-12, 2016.
  28. *Received the Outstanding Poster Presentation Award
  29. Shizuma Sato, Kazuo Umemura, Gilbert Bustamante and Jing Yong Ye, “Fluorescence and Photoacoustic Measurements on Single-Walled Carbon Nanotubes Functionalized with Fluorophore-Tagged DNA”, BMES San Antonio Symposium, March 5, 2016.
  30. Andres W. Morales, Yu S. Zhang, Julio Aleman, Parissa Alerasool, Mehmet R. Dokmeci, Ali Khademhosseini, Jing Yong Ye, “Label-free detection of protein molecules secreted from an organ-on-a-chip model for drug toxicity assays”, SPIE Photonics West, San Francisco, California, 13-18 February 2016.
  31. Corinne D. Nawn, Brian B. Souhan, Robert Carter, Caitlin Kneapler, Nicholas F. Fell, Jing Yong Ye, “Spectral characterization of tracheal and esophageal tissues using a hyperspectral camera and fiber optic sensors”, SPIE Photonics West, San Francisco, California, 13-18 February 2016.
  32. Dustin Kiker, Utpal Mondal, Chris Moreau, Jing Y. Ye, Sandeep Patel, Laura Rosenkranz, “Pancreatic Tissue Ablation Using Holmium:YAG laser in the Porcine Model: A Feasibility Study.” PancreasFest, Pittsburgh, PA July 22-24, 2015.
  33. Jing Yong Ye, “Development of a Photonic Crystal Sensor for Label-free Bioassays”, San Antonio Nanotechnology Forum, San Antonio, Nov. 25, 2015
  34. Kavya Kadugodinandareddy, Vinitha Karunakarana John Thomas Pirog, Ralph Peterson and Jing Yong Ye, “Optimizing Optoacoustic Sensors Utilizing Different Cavity Materials of a Photonic Crystal Structure”, UTSA Materials Research Day, Aug. 24, 2015.
  35. Francisco Pedraza, Ajith Kuma, Lawrence Mimun, Jing Yong Ye, Dhiraj Sardar, “Application of near infrared sensitive multifunctional nanophosphors in optical and photoacoustic imaging”, American Physical Society Annual meeting, March 2–6, 2015; San Antonio, Texas.
  36. Gilbert Bustamante, He Huang, Ralph Peterson, and Jing Yong Ye, “Photoacoustic Tomography Filtered-Backprojection Reconstruction Improvement Through A Weighting Function”, BMES San Antonio Chapter Symposium, March 27, 2015.
  37. Ralph Peterson, Kavya Kadugodinandareddy, Vinitha Karunakaran, Casey Whitney, Jian Ling and Jing Yong Ye, “Determination of Methemoglobin Percent Concentration Using Photoacoustic Spectroscopy”, BMES San Antonio Chapter Symposium, March 27, 2015.
  38. Bailin Zhang, Bing Wang, Andres W. Morales, Jonathan Scudder, Mandan K. Bhattacharyya, Jing Yong Ye, “Study of protein-peptide interactions with bioinformatics calculation and a label-free biosensor”, BMES San Antonio Chapter Symposium, March 27, 2015.
  39. Ralph Peterson, Jian Ling, Casey Whitney, and Jing Yong Ye, “Utilizing an open-microcavity optoacoustic sensor for spectroscopic determination of methemoglobin concentration”, SPIE BiOS, 7 – 12 February 2015
  40. San Francisco, California.
  41. Ralph Peterson, Jian Ling, Casey Whitney, and Jing Yong Ye, “Photoacoustic Spectroscopic Determination of Met-Hb Concentration Ratio Using an Open-Microcavity Photonic Crystal Ultrasound Sensor”, BMES annual meeting, Oct. 22-25, 2014, San Antonio, Texas.
  42. He Huang, Gilbert Bustamante, Ralph Peterson, and Jing Yong Ye, “Filtered Back-Projection with a Precise Weighting Function for Photoacoustic Image Reconstruction”, BMES annual meeting, Oct. 22-25, 2014, San Antonio, Texas.
  43. Zhang, B. Wang, A.W. Morales, J. Scudder, M. K. Bhattacharyya, and J. Y. Ye, “Study Interactions of FvTox1 with Synthetic Peptides Using a Label-Free Biosensor and Molecular Simulations”, BMES annual meeting, Oct. 22-25, 2014, San Antonio, Texas.
  44. Botting, A. Plumber, G. Bustamante, J. Ye, “Investigation of Wall Effects for Particle Viscometer”, BMES annual meeting, Oct. 22-25, 2014, San Antonio, Texas.
  45. Gilbert Bustamante and Jing Yong Ye, “Modelization of Photoacoustic Signals From Magnetically Oriented Gold Nanorods”, Annual SACNAS National Conference, Oct. 3-6, 2013, San Antonio, Texas.
  46. Zhang, A. W. Morales, J. Manuel Tamez Vela, R. Peterson, L. Tang, J. Y. Ye, “Label-free PC-TIR Sensor for Cardiac biomarker Sensing”, BMES annual meeting, Sept. 25-28, 2013, Seattle, Washington.
  47. Peterson, S. Solis, B. Zhang, H. Huang, and J. Y. Ye, “Open Cavity Based Optoacoustic Sensor Enhanced with High-Compressibility Coupling Media”, BMES annual meeting, Sept. 25-28, 2013, Seattle, Washington.
  48. Veronica E. Salvio, Bailin Zhang, JingYong Ye, “Development of a Photonic Crystal Sensor for Label-Free Bioassay”, LSAMP Conference, Sept. 19-21, 2013, Midland, Texas.
  49. Steven Solis, Ralph Peterson, River Huang, Heather Klug-De Santiago, and Jing Yong Ye, “Development of an Efficient Iterative Method for Photoacoustic Image Reconstruction”, Annual SACNAS National Conference, Oct. 3-6, 2013, San Antonio, Texas.
  50. Ralph Peterson, Steven Solis, Bailin Zhang, He Huang, and Jing Yong Ye, “Enhancement of the Sensitivity of an Open Micro-Cavity Based Optoacoustic Sensor”, CLEO, June 9-14, 2013, San Jose, California.
  51. Heather LPK De Santiago, Ralph Peterson, Bailin Zhang, Steven Solis, and Jing Yong Ye, “Cancer Prevention and Health Promotion: What Research Says Works and What You Can Do”, Bi-national Immunization Conference, April 25-27, 2013 at The University of Texas-Pan American.
  52. Bailin Zhang, Ralph Peterson, Juan Manuel Tamez Vela, Liang Tang, Jing Yong Ye, “Label-free Detection of Cardiac Biomakers with an Open-cavity Optical Biosensor”, BMES annual meeting, October 24–27, 2012, Atlanta, Georgia.
  53. Ralph Peterson, Bailin Zhang, Heather Klug-De Santiago, and Jing Yong Ye, “Development of an Optical Ultrasound Sensor for Photoacoustic Imaging of Melanoma”, CPRIT annual conference, October 24–26, 2012, Austin, Texas.
  54. Bailin Zhang, Chia-Yi Fang, Cheng-Chun Chang, Ralph Peterson, Saher Maswadi, Randolph D. Glickman, Huan-Cheng Chang, and Jing Yong Ye, “Fluorescence and Photoacoustic Emission from Nanodiamonds”,
  55. BioMedOpTex Symposium, May 23-25, 2012, College Station, Texas.
  56. Bailin Zhang, Shatha Dallo, Ralph Peterson, Syed Hussain, Tao Weitao, Jing Yong Ye, “Development of a Highly Sensitive Label-Free Nucleic Acid Biosensor”, OSA Biomedical Optics meeting, April 28 – May 2, 2012, Miami, Florida
  57. Bailin Zhang, Chia-Yi Fang, Cheng-Chun Chang, Saher Maswadi, Ralph Peterson, Huan-Cheng Chang, and Jing Yong Ye, “Enhancement of Photoacoustic Emission from Fluorescent Nanodiamonds”, 28th Southern Biomedical Engineering Conference, Houston, Texas, May 4-6, 2012
  58. Bailin Zhang, Ralph Peterson, Syed Hussain, Liang Tang, Jing Yong Ye, “Label-free Detection of Cardiac Biomakers with an Open-cavity Optical Resonator”, 28th Southern Biomedical Engineering Conference, Houston, Texas, May 4-6, 2012.
  59. Jing Yong Ye, Bailin Zhang, Ralph Peterson, Syed Hussain, Liang Tang, “Photonic Crystal Biosensors for Sensitive Label-free Bioassays”, Bit’s 1st Annual World Congress of Molecular & Cell Biology, Beijing, China, Aug. 5-8, 2011.
  60. Ralph Peterson, Shijun Xiao, Syed Hussain, Victoria E. Centonze, James Lechleiter, Jing Yong Ye, “Development of a whole-spectrum fluorescence microscope”, 8th Advanced Imaging Methods Workshop, Berkeley, CA, Jan. 19-21, 2011.
  61. Yu-Chung Chang, Jing Yong Ye, Thommey P. Thomas, Alina Kotlyar, Zhengyi Cao, James R. Baker Jr., and Theodore B. Norris, Multiphoton Flow Cytometry in Whole Blood and in Vivo with a Double-clad Fiber Probe, Progress In Electromagnetics Research Symposium Abstracts, Suzhou, China, September 12-16, 2011.
  62. Ralph Peterson, Shijun Xiao, Syed Hussain, Victoria E. Centonze, James Lechleiter, Jing Yong Ye, “Development of a whole-spectrum fluorescence microscope”, BMES Annual Meeting, Austin, Texas, Oct. 6-9, 2010.
  63. Shijun Xiao, Syed Hussain, Ralph Peterson, Jing Yong Ye, “Simulation of label-free biosensors with a photonic crystal open cavity”, BMES Annual Meeting, Austin, Texas, Oct. 6-9, 2010.
  64. Colin M. Chow, Yun Zhou, Yunbo Guo, Theodore B. Norris, Xueding Wang, Cheri X. Deng, and Jing Yong Ye, “Optoacoustic Sensor with a Unique Open-cavity Structure”, Biomedical Optics (BIOMED) meeting at Miami, FL. April 11-14, 2010.
  65. Yunbo Guo, Jing Yong Ye, Thommey P. Thomas, James R. Baker, Theodore B. Norris, “Label-Free Measurement of DNA Oligomer Binding Using a Highly-Sensitive Photonic Crystal Biosensor”, CLEO/QELS, San Jose, California. May 16-21, 2010.
  66. Shijun (Shawn) Xiao, PhD, Syed Hussain, Ralph Peterson, Jing Yong Ye, Development of label-free biosensors with a photonic-crystal open cavity, 1st Annual Frontiers of Translational Science Research Day, San Antonio, March 25, 2010.
  67. Yu-Chung Chang, Jing Yong Ye, Thommey P. Thomas , James R. Baker, Jr. and Theodore B. Norris, “Fiber-optic Two-photon Fluorescence Correlation Spectroscopy for Remote Cell Flow Velocity Measurements,” IEEE Sensors 2010, Waikoloa, Hawaii, November 1-4, 2010.
  68. Yu-Chung Chang, Jing Yong Ye, Thommey P. Thomas, James R. Baker, Jr. and Theodore B. Norris, “Cell flow analysis with a two-photon fluorescence fiber probe,” SPIE Photonic Asia 2010, Beijing, China, October 18-20, 2010.
  69. Yunbo Guo, Jing Yong Ye, Baohua Huang, Daniel McNerny, Thommey P. Thomas, James R. Baker, Jr. and Theodore B. Norris, “Real-time small molecule binding detection using a label-free photonic crystal biosensor”, Photonic West-BIOS, San Francisco, California, Jan 23-28, 2010.
  70. Jing Yong Ye, Moussa N’Gom, Yu-Chung Chang, Ashish Agarwal, Nicholas Kotov, James Baker, Jr., Theodore Norris, “Correlation Spectroscopy of Third-Harmonic Generation by Single Nanorods”, CLEO/QELS, Baltimore, May 31-June 5, 2009.
  71. Yu-Chung Chang, Jing Yong Ye, Thommey Thomas, Zhengyi Cao, Alina E. Kotlyar, James R. Baker Jr., Theodore B. Norris, “Fiber-Optic Multiphoton in vivo Flow Cytometry”, CLEO/QELS, Baltimore, May 31-June 5, 2009.
  72. Yunbo Guo, Thommey P. Thomas, Jing Y. Ye, Andrzej Myc, James R. Baker Jr., Theodore B. Norris, “Real-Time, Label-Free Protein Binding Detection with a One Dimensional Photonic Crystal Sensor”, CLEO/QELS, Baltimore, May 31-June 5, 2009.
  73. Moussa N’Gom, Ashish Agarwal, Jingyong Ye, Nicholas Kotov, Theodore B. Norris, “Enhanced Surface Third Harmonic Generation from Gold Nanorods”, CLEO/QELS, Baltimore, May 31-June 5, 2009.
  74. Yu-Chung Chang, Jing Yong Ye, Thommey Thomas, Alina Kotlyar, Eric R. Tkaczyk, James R. Baker, Jr., and Theodore B. Norris, “Fiber-optic based two-photon in vivo flow cytometer”, Photonic West-BIOS, San Jose, Jan 24-29, 2009.
  75. Yunbo Guo, Jing Yong Ye, Charles Divin, Thommey P. Thomas, Andrzej Myc, Tommaso F. Bersano-Begey, James R. Baker, Jr., and Theodore B. Norris, “Label-free biosensing using a photonic crystal structure in a total-internal-reflection geometry”, Photonic West-BIOS, San Jose, Jan 24-29, 2009.
  76. Jing Yong Ye, “Enhanced Biosensing and Ultrafast Laser Interaction with Multifunctional Nanoparticles”, Invited talk at Ann Arbor Section of the Optical Society of America, Nov. 11, 2008.
  77. Jing Yong Ye, Thommey Thomas, Yu-Chung Chang, Rameshwer Shukla, Alina Kotlyar, Bradley Liang, Theodore B. Norris, and James R. Baker, Jr., “Two-photon fluorescence biosensing through a dual-clad optical fiber”, the Ninth Principal Investigators (PI) Meeting for the Innovative Molecular Analysis Technologies (IMAT) Program, Cambridge, Oct. 26-28, 2008.
  78. Lajos P. Balogh, Christine Tse, Marwa J. Zohdy, Wojciech Lesniak, Jingyong Ye, and Matthew O’Donnell, Photomechanical Therapy: Destruction of Cells with Microbubbles Generated by Laser Induced Optical Breakdown of Targeted Nanocomposites, Fourth Annual Symposium of the American Academy of Nanomedicine, September 4-7, 2008, Bolger Center, Potomac, Maryland
  79. Christine Tse, Marwa J. Zohdy, Jing Yong Ye, and Matthew O’Donnell, Wojciech Lesniak, and Lajos Balogh, Towards Photomechanical Therapy: Intracellular photodisruption of cancer cells with microbubbles from laser induced optical breakdown of targeted dendrimer nanocomposites, AACR Centennial Meeting, April 12-16 2008, San Diego
  80. P. Balogh, W. Lesniak, M. T. Ould Ely, M. O’Donnell, C. Tse, M. Zohdy, J.Y. Ye, M.T. Kariapper, and M. K. Khan, Composite Nanodevices in Imaging and Treatment of Cancer, NSTI Nanotech 2008, June 1-5 2008, Boston, MA
  81. P. Balogh, W. Lesniak, M. T. Ould Ely, M. O’Donnell, C. Tse, M. Zohdy, J.Y. Ye, M.T. Kariapper, and M. K. Khan, Composite Nanodevices in Imaging and Treatment of Cancer, NSTI Nanotechnology Conference and Trade Show, June 1-5, 2008, Boston, Massachusetts
  82. Kun Yang, Yun Zhou, Zhenzhen Fan, Jingyong Ye, and Cheri X. Deng, “Dynamic measurements of the generation and trapping of bubbles by a self-focused femtosecond laser beam”, the 2008 IEEE International Ultrasonics Symposium (IUS), Beijing, China, November 2-5, 2008.
  83. Christine Tse, Wojciech Lesniak, Marwa J. Zohdy, Lajos Balogh, Matthew O’Donnell, Theodore B. Norris, and Jing Yong Ye, “Intracellular Photodisruption with Targeted Silver/Dendrimer Nanocomposites and Femtosecond Lasers” CLEO/QELS, San Jose, May 4-9, 2008.
  84. Yunbo Guo, Jing Yong Ye, Charles Divin, Andrzej Myc, James R. Baker, Jr. and Theodore B. Norris, “Optical biosensor based on one-dimensional photonic crystal in a total-internal-reflection geometry”, CLEO/QELS, San Jose, May 4-9, 2008.
  85. Yu-Chung Chang, Jing Yong Ye, James R. Baker, Jr. and Theodore B. Norris, “Two-photon Fluorescence Correlation Spectroscopy through a Dual-Clad Optical Fiber”, CLEO/QELS, San Jose, May 4-9, 2008.
  86. Thommey P. Thomas, Yu-Chung Chang, Jing Yong Ye, Suyang Qin, Zhengyi Cao, Alina Kotlyar, Theodore B. Norris, and James R. Baker, Jr., “In situ Quantification of Breast Cancer Signatures using a Two-photon Optical Probe”, 5th Annual Biomedical Research Symposium on image-guided therapy, Nov. 12, 2008
  87. Yu-Chung Chang, Thommey P. Thomas, Jing Yong Ye, Alina Kotlyar, Zhengyi Cao, Istvan J. Majoros, Theodore B. Norris and James R. Baker, Jr., “Quantification of Dentrimer Nanoparticle Targeting on Tumor Cells by Two-photon Excitation Fluorescence through a Dual-Clad Optical Fiber”, OSA biomedical optical imaging meeting, 2008.
  88. Jing Yong Ye, Thommey Thomas, Christine Tse, Marwa J. Zohdy, Istvan Majoros, Wojciech Lesniak, Lajos P. Balogh, Matthew O’Donnell, Theodore B. Norris, and James R. Baker, Jr. “Biomedical Applications of a Multifunctional Nano-Device for Enhanced Biosensing and Laser-Induced Optical Breakdown” OSA topical meeting on Nanophotonics, Hangzhuo, China, June 18-21, 2007.
  89. Eric R. Tkaczyk, Jing Yong Ye, Steve Katnik and Theodore B. Norris, Kathryn E. Luker and Gary D. Luker, James R. Baker, Jr. “Enhanced Two-Photon In Vivo Flow Cytometry with an Extended Cavity Laser”, CLEO/QELS 2007
  90. P. Balogh, C. Tse, W. Lesniak, J. Ye, M. Zohdy, M. O’Donnell and M.K. Khan, Selective Destruction of Nanocomposite Labeled Cells, NSTI Nanotechnology Conference and Trade Show, Santa Clara, May 20-24, 2007.
  91. Lajos P. Balogh, Christine Tse, Wojciech Lesniak, Jingyong Ye, Matthew O’Donnell and Mohamed K. Khan, Photomechanical therapy: destruction of nanocomposite labeled cells by laser induced optical breakdown, Third Annual Meeting of the American Academy of Nanomedicine, September 8-10, 2007, San Diego, CA
  92. Balogh LP 1, Tse C 2, Lesniak W1, Ye J 3, O’Donnell M2, Khan MK, Photomechanical therapy: destruction of nanocomposite labeled cells by laser induced optical breakdown, Nanomedicine: Nanotechnology, Biology, and Medicine 3 (2007) 350
  93. Jing Yong Ye, Christine Tse, Marwa J. Zohdy, Theodore B. Norris, and Matthew O’Donnell, “Nanoparticle Enhanced Optical Breakdown and Microbubble Generation”, The Fifth Annual Ann Arbor Symposium on Relativistic and Sub-Relativistic Intensity Lasers and Their Applications, October 25-26, 2006. Invited talk
  94. Lajos P Balogh , Bindu M Nair , Muhammed S T Kariapper , Wojciech Lesniak , Mohamed K Khan , Christine Tse , Marwa J Zohdy , Jing Yong Ye , T Norris , Matt O’donnell, “Nanocomposite labeling and selective destruction of cells using Laser Induced Optical Breakdown (LIOB)”. Nanomedicine: Nanotechnology, Biology and Medicine, Vol. 2(4):301-2 (2006).
  95. James Baker, Jr., Jing Yong Yee, Thommy Thomas, Ted Norris, “New Fiberoptic Technology for the Detection of Biomarkers in Tissue”, The 7th Principal Investigators Meeting, Innovative Molecular Analysis Technologies Program, Bethesda, Maryland, September 7-8, 2006
  96. Jing Yong Ye, James R. Baker, Jr., and Theodore B. Norris, “Whole Spectrum Fluorescence Detection with Ultrafast White Light Excitation”, CLEO/QELS, Long Beach, California, May 23-25, 2006.
  97. Jing Yong Ye, Christine Tse, Marwa J. Zohdy, Kyle Hollman, Lajos Balogh, Theodore B. Norris, and Matthew O’Donnell, “Generating Controllable Microbubbles inside Individual Cells Using Femtosecond Laser Pulses”, CLEO/QELS, Long Beach, California, May 23-25, 2006.
  98. Lajos P Balogh, Bindu M Nair, Muhammed S T Kariapper, Wojciech Lesniak, Mohamed K Khan, Christine Tse , Marwa J Zohdy , Jing Yong Ye , T Norris , Matt O’donnell, “Nanocomposite labeling and selective destruction of cells using Laser Induced Optical Breakdown (LIOB)”. Nanomedicine: Nanotechnology, Biology and Medicine, Vol. 2(4):301-2 (2006).
  99. Eric R. Tkaczyk, Augustin Mignot, Jing Yong Ye, Theodore B. Norris, “Increasing two-photon fluorescence signals by coherent control”, Photonics West, BIOS, San Jose, CA, January 21-26, 2006.
  100. Thommey Thomas, Jing Yong Ye, Istvan Majoros, Alina Kotlyar, Zhengyi Cao, James Baker Jr. and Theodore B. Norris, “Real-time fluorescence measurement of a tumor-targeted nanodevice by a two-photon optical fiber fluorescence probe”, Photonics West, BIOS, San Jose, CA, January 21-26, 2006.
  101. Christine Tse, Marwa J. Zohdy, Jing Yong Ye, and Matthew O’Donnell, “Subsurface photodisruption in pig skin as monitored by high-frequency ultrasound”, Photonics West, BIOS, San Jose, CA, January 21-26, 2006.
  102. Lajos P. Balogh, Wojciech Lesniak, Bindu M Nair, Muhammed S. T. Kariapper, Mohamed K Khan; Christine Tse, Marwa J. Zohdy, Jingyong Ye, T. Norris, and Matt O’Donnell, Nanocomposite Labeling and Selective Destruction of Cells Using Laser Induced Optical Breakdown (LIOB), Annual Meeting of the American Academy of Nanomedicine AANM, September 9-11, 2006 Washington, DC
  103. Jing Yong Ye, Mon Thiri Myaing, and Theodore B. Norris, Thommey P. Thomas, Istvan Majoros, Alina Kotlyar, and James R. Baker, Jr., “Double-clad photonic-crystal-fiber based scanning microscopy”, CLEO/QELS, Baltimore, Maryland, May 22-27, 2005.
  104. Jing Yong Ye, Theodore B. Norris, Christine Tse, Marwa J. Zohdy, Kyle Hollman, Lajos Balogh, and Matthew O’Donnell, “Nanoparticle Interactions and Microbubble Generation in Optical Breakdown”, Fourth Annual Ann Arbor High Intensity Ultrafast Laser Symposium, Ann Arbor, September 13-14, 2005. Invited talk
  105. Zhong CF, Thommey PT, Ye JY, Cao Z, Myc A, Baker JR Jr., Norris TB. “Multiphoton in vivo Flow Cytometry” CLEO/QELS, Baltimore, Maryland, May 22-27, 2005.
  106. Jing Yong Ye, Mon Thiri Myaing, and Theodore B. Norris, Thommey P. Thomas, Istvan Majoros, Alina Kotlyar, and James R. Baker, Jr., “Development of a dual-clad photonic-crystal-fiber based scanning microscope”, Photonics West, Bios 2005 San Jose, CA, January 22-27, 2005
  107. J. Zohdy, C. Tse, J.Y. Ye, L. Balogh, T. Norris, M. O’Donnell, “Optical and ultrasonic monitoring of laser-generated intracellular contrast agents: initial cell culture studies”, Photonics West, Bios 2005. San Jose, CA, January 22-27, 2005
  108. Cheng Frank Zhong, Jing Yong Ye and Theodore B. Norris, Andrzej Myc, Zhengyi Cao, Anna Bielinska, Thommey Thomas, and James R. Baker, Jr., “Two-photon Flow Cytometry”, Photonics West, Bios 2005. San Jose, CA, January 22-27, 2005.
  109. Zhong CF, Ye JY, Myc A, Cao Z, Kukowska J, Baker JR Jr., Norris TB, “In Vivo Flow Cytometry”, OSA Meeting, Rochester, NY, Oct. 2004
  110. Jing Yong Ye, Mon Thiri Myaing, Frank Cheng Zhong, Thommey P. Thomas, Andrej Myc, Anna Bielinska, Jolanta Kukowska-Latallo, Istvan Majoros, Alina Kotlyar, Peter Cao, James R. Baker, Jr. and Theodore B. Norris, “In Vivo Quantitative Biosensing Based on Multiphoton Excitation”, SPIE-Optical Imaging Meeting, 20–22 September 2004, Bethesda, Maryland
  111. Myaing MT, Ye JY, Norris TB, Thomas TP, Baker Jr. JR, Wadsworth WJ, Bouwmans G, Knight JC, Russell P.St.J., “Two-photon fluorescence biosensing with conventional and photonic crystal fibers”, Photonics West, Bios 2004, Optical fibers and sensors for medical applications IV, 24-29 January 2004, San Jose, California
  112. Monitoring LIOB-induced Bubble Characteristics in Gelatin using High-Frequency Ultrasound, Christine Tse, Marwa Zohdy, Jing Yong Ye, Theodore B. Norris , Lajos Balogh, Kyle Hollman, and Matthew O’Donnell, Conference on Ultrasonic Imaging and Signal Processing, part of the International Symposium on Medical Imaging 2004, 14-19, February 2004 in San Diego, CA USA
  113. Christine Tse, Marwa Zohdy, Jing Yong Ye, Theodore B. Norris, Lajos Balogh, Kyle Hollman, and Matthew O’Donnell, “Acoustic detection of controlled LIOB bubble creation in tissue-mimicking gelatin phantoms”, 2004 IEEE International Ultrasonics, Ferroelectrics, and Frequency Control 50th Anniversary Joint Conference held August 24-27, 2004, in Montreal,Canada.
  114. J. Zohdy, C. Tse, J.Y. Ye, M. O’Donnell, “Combined optical and ultrasonic monitoring of laser-generated intracellular contrast agents: initial cell culture studies”, 2004 IEEE International Ultrasonics, Ferroelectrics, and Frequency Control 50th Anniversary Joint Conference held August 24-27, 2004, in Montreal,Canada.
  115. Myaing MT, Thomas TP, Ye J, Keszler B, Kotlyar A, Cao P, Norris TB, Baker JR Jr. Nanoparticle targeting of tumors measured by two photon optical fiber fluorescence probe. Oral presentation, University of Michigan Medical School Research Symposium, Ann Arbor, May 2004.
  116. Ye JY, Tse C, Zhody M, Chang G, Hollman K, and O’Donnell M., Baker, Jr. J, and Norris TB, Trapping cavitation bubbles with a self-focused laser beam, CLEO/IQEC conference, San Francisco, CA, May 16-21, 2004.
  117. Myaing, M. T., J. Y. Ye, T. B. Norris, T. Thomas, K. Candido, A. Kotlyar, J., Beals, P. Cao, B. Keszler, J. Baker, Jr., “Quantitative, in vivo fluorescence measurements with a two-photon fiber probe”, CLEO/IQEC conference, San Francisco, CA, May 16-21, 2004.
  118. Tse C, Zhody M, Ye JY, Norris TB, Balogh L, Hollman K, and O’Donnell M., “Monitoring LIOB-induced bubble characteristics in gelatin using high-frequency ultrasound,” Proceedings of the 2004 Conference on Medical Imaging 5373 (2004).
  119. Marwa J. Zohdy, Christine Tse, Jing Yong Ye, Matthew O’Donnell, “An ultrasonic method to measure effective temperature in the vicinity of laser-induced optical breakdown”, 2003 IEEE International Ultrasonics Symposium, October 5-8, 2003, Honolulu, Hawaii.
  120. Jing Yong Ye, T. B. Norris, L. P. Balogh, J. R. Baker, Jr., S. M. Milas, K. W. Hollman, S. Emelianov , M. O’Donnell, Acoustic Detection of Microbubble Formation in Enhanced Optical Breakdown of Silver/Dendrimer Nanocomposites, Conference on Lasers and Electro-Optics, June 1-6, 2003.
  121. Buma, J.Y. Ye, T. B. Norris, S. Milas, M. Spisar, K. Hollman, M. O’Donnell, J. Hamilton, S. Y. Emelianov, L. Balogh, and J. Baker, Jr., “Optoacoustics for Biomedical Applications”, J. Acoust. Soc. Am. 114, no. 4, pp. 2377 (2003) (invited talk).
  122. Mon Thiri Myaing, Jing Yong Ye, Theodore B. Norris, T. Thomas, A. Kotylar, A. Patri J. Baker, Jr. W.J. Wadsworth, R.M. Percival, G. Bouwmans, J.C. Knight, and P.St.J. Russell, Enhanced Biosensing Using Photonic Crystal Fibers, Conference on Lasers and Electro-Optics, June 1-6, 2003.
  123. Y. Ye, M. T., Myaing, T. Thomas, L. Balogh, J. Baker, Jr., and T. B. Norris, Two-Photon In Vivo Flow Cytometry, Second Principal Investigators Meeting Joint NCI-NASA Fundamental Technologies for Biomolecular Sensors Program, Chicago, Illinois, July 28-29, 2003
  124. Myaing MT, Ye JY, Thomas TP, Norris T, Baker Jr. JR. Two-photon fiber optical detection of tumor fluorescence. The fourth PI’s meeting of the UIP, San Diego, March 2003.
  125. Thomas TP, Myaing MT, Ye JY, Kotlyar A, Candido K, Cao P, Beals J, Keszler B, Norris T, Baker Jr JR. Fluorescence measurement of solid tumors using two-photon laser excitation through optic fibers. University of Michigan Medical School Research Symposium, Ann Arbor, May 2003.
  126. Jing Yong Ye and T. B. Norris, Reducing laser-induced optical breakdown threshold with metal nanoparticles, Symposium on Femtosecond Laser micromachining: Applications in Engineering, Bioengineering and Surgery, Ann Arbor, MI, May 2, 2002. Invited talk
  127. Lajos Balogh, Jing Yong Ye, Theodore B. Norris, James Baker Jr., Susanne Milas, Kyle Hollman, Stanislav Emelianov, Matthew O’Donnell, Optical and acoustic characterization of laser-induced optical breakdown and its enhancement by metal/dendrimer nanocomposites, MSR meeting, December 2-6, 2002, Boston, Massachusetts
  128. O’Donnell, S. M. Milas, J. Y. Ye, T. B. Norris, L. P. Balogh, J. R. Baker, Jr., K. W. Hollman, S. Emelianov, Acoustic Detection of LIOB in Dendrimer Nanocomposites: Implications for Site Targeted Molecular Diagnostics and Therapeutics, 2002 IEEE International ultrasonic symposium, October 8-11, 2002, Munich, Germany
  129. Y. Ye and T. B. Norris, Reducing laser-induced optical breakdown threshold with metal nanoparticles, Symposium on Femtosecond Laser micromachining: Applications in Engineering, Bioengineering and Surgery, Ann Arbor, MI, May 2, 2002
  130. Y. Ye, L. Balogh, and T. B. Norris, Enhancement of laser-induced optical breakdown using metal/dendrimer nanocomposites, Conference on Lasers and Electro-Optics, Long Beach, CA, May 19-24, 2002.
  131. Y. Ye, M. T., Myaing, T. Thomas, L. Balogh, J. Baker, Jr., and T. B. Norris, Imaging and Triggering of Dendrimer Nanocomposites for Cancer Treatements, The Third Principal Investigators (PI) Meeting Unconventional Innovations Program, Ellicott City, Maryland, February 25-26, 2002
  132. Ishikawa, and J. Y. Ye, Single-molecule imaging and time-resolved fluorometry of an analog of adenine. ACS National Meeting, San Diego, CA, April 1-5, 2001
  133. Y. Ye, L. Sherman, O. Albert, and T. B. Norris, Adaptive correction for aberrations in scanning multiphoton confocal microscopy, The Ann Arbor Section Meeting of Optical Society of American, Ann Arbor, Michigan, Feb. 26, 2001. Invited talk
  134. Sherman, J. Y. Ye, and T. B. Norris, Adaptive aberration correction for specimen induced spherical aberration, CLEO, Baltimore, Maryland, May 6-11, 2001.
  135. B. Norris, L. Sherman, O. Albert, and J. Y. Ye (actual speaker), Adaptive optics for multiphoton confocal microscopy, The Optical Society of American 2000 Annual meeting, Providence, Rhode Island, Oct. 22-26, 2000. Invited talk
  136. Inouye, M. Arakawa, M. Abe, J. Y. Ye, T. Hattori, and H. Nakatsuka
  137. Optical Field Enhancement in a Total-Reflection-Type 1-D Photonic Crystal
  138. PECS International Workshop on Photonic and Electromagnetic Crystal Structures, T4-17, (2000).
  139. Y. Ye, Heterogeneity of Nanoenvironment Revealed by Triphenylmethane Dyes: Time-Resolved Spectroscopy and Single-Molecule Imaging, The 1st International Symposium for Chinese Youth Scientists on Atomic and Molecular Physics, Wuhan, China, September 21-24, 1999. Invited talk
  140. Y. Ye, Y. Yamane, M. Yamauchi, H. Nakatsuka, and M. Ishikawa, Fluorescence Imaging and Time – Resolved Spectroscopy of Individual Interactions between a Nucleotide Analogue and DNA Polymerase I, US-Japan Information Exchange Seminar on Photoconversion and Photosynthesis:Past, Present and Future Prospects, Ozagaki, Japan, November 15-17, 1999.
  141. Y. Ye, Y. Yamane, M. Yamauchi, H. Nakatsuka, and M. Ishikawa, Direct Observation of Interactions of Single Fluorescent Nucleotide Analogue Molecules with DNA Polymerase I, The 5th International Workshop on “Single Molecule Detection and Ultrasensitive Analysis in the Life Sciences”, Berlin, Germany, 29 September – 1 October 1999.
  142. Y. Ye, and M. Ishikawa, Single-Molecule Fluorescence Imaging and Time-Resolved Spectroscopy of a Site-Sensitive Dye Molecule, The JRCAT Workshop on Technology for Identifying & Manipulation Atoms & Molecules; The 2nd Workshop on Scanning Probe and Nanoelectronics, Tsukuba, January. 12-14, 1999. Invited talk
  143. Y. Ye, Y. Yamane, M. Yamauchi, N. Tsurumachi, H. Nakatsuka, and M. Ishikawa, Enhancement of Two-Photon Excited Fluorescence Using One-Dimensional Photonic Crystals, The Centennial Meeting of American Physics Society, March 20-26,1999, Atlanta, Georgia.
  144. Yamane, J. Y. Ye, M. Yamauchi, N. Tsurumachi, H. Nakatsuka, and M. Ishikawa Enhancement of Two-Photon Excited Fluorescence Using One-Dimensional Photonic Crystals (II), The 54th Annual Meeting of Japanese Physics Society, Hiroshima, March 28 – 31, 1999.
  145. Y. Ye, Single-Molecule Fluorescence Imaging and Time-Resolved Spectroscopy, The 102th Symposium on the Development of Nanotechnology and Its Applications to Physics and Chemistry —the Japanese Research Association for Organic Electronics Materials, Tokyo, January. 19, 1999. Invited talk
  146. Y. Ye, M. Ishikawa, and O. Yogi, Single-Molecule Fluorescence Imaging and Time-Resolved Spectroscopy of a Site-Sensitive Dye Molecule, The 98′ JRCAT International Symposium on Atom Technology, Tokyo, November 25, 1998.
  147. Ishikawa, O. Yogi, J. Y. Ye, and T. Yasuda, Guiding Principles for Construction of Microvials for Single-Molecules on Surfaces, The 98′ JRCAT International Symposium on Atom Technology, Tokyo, November 25, 1998.
  148. Yogi, T. Kawakami, M. Ishikawa, J. Y. Ye, and M. Yamauchi, Arrangement of Micro Droplets for Preparation of Single Molecules on Surfaces, The 98′ JRCAT International Symposium on Atom Technology, Tokyo, November 25, 1998.
  149. Ishikawa, O. Yogi, J. Y. Ye, and M. Yamauchi, Applications of Single-Molecule Fluorescence Imaging and Spectroscopy in Analytical Chemistry, The 16th Biotechnology Symposium, Tokyo, November 13, 1998.
  150. Y. Ye, Y. Yamane, M. Yamauchi, N. Tsurumachi, H. Nakatsuka, and M. Ishikawa, Enhancement of Two-Photon Excited Fluorescence of 2-Aminopurine with One-Dimensional Photonic Crystals, The 1998 Autumn Meeting of Japanese Physical Society, Okinawa, September 25-28, 1998.
  151. Ishikawa, J. Y. Ye, O. Yogi, and M. Yamauchi Single-Molecule Imaging and Spectroscopy for Analytical Chemistry on Surfaces, The 4th International Workshop on Single Molecule Detection and Analysis in Life Sciences, Berlin-Adlershof, September 30 – October 2, 1998.
  152. Yogi, M. Ishikawa, J. Y. Ye, M. Yamauchi, and T. Kawakami Development of a Droplet Generator for Single-Molecule Fluorescence Imaging, The 1998 Meeting of Organic Material Electronics, Himeji, September 14, 1998.
  153. Yogi, M. Ishikawa, J. Y. Ye, and M. Yamauchi, Development of a Droplet Generator for Single-Molecule Fluorescence Imaging (II), The 59th Autumn Meeting of the Japan Society of Applied Physics, Hiroshima, September 15-18, 1998.
  154. Y. Ye, M. Ishikawa, O. Yogi, T. Okada, and Y. Maruyama, Inhomogeneity of a Polymer Film Revealed by Fluorescence Imaging and Time-Resolved Spectroscopy of Single-Molecule Probes, The 1998 March Meeting of American Physics Society, Los Angeles, March 16-20, 1998.
  155. Y. Ye, T. Hattori, H. Nakatsuka, Y. Maruyama, M. Ishikawa, and T. Okada, Microscopic Dynamics in Glass-Forming Materials Revealed by Fluorescent Probe Molecules, The 1998 March Meeting of American Physics Society, Los Angeles, March 16-20, 1998.
  156. Y. Ye, M. Ishikawa, O. Yogi, T. Okada, and Y. Maruyama, Single-Molecule Fluorescence Imaging and Time-Resolved Spectroscopy of a Site-Sensitive Dye Molecule, The 5th International Workshop on Femtosecond Technology, Tsukuba, Japan, February 12-13, 1998.
  157. Yogi, M. Ishikawa, and J. Y. Ye, Development of a Droplet Generator for Single-Molecule Fluorescence Imaging, International Conference on Optical MEMS and Their Applications, Nara, Japan, November 18-21, 1997
  158. Yogi, M. Ishikawa, and J. Y. Ye, Development of a Droplet Generator for Single-Molecule Fluorescence Imaging, The 5th JRCAT International Symposium on Atom Technology, Tokyo, Japan, November 26, 1997
  159. Ishikawa, J. Y. Ye, O. Yogi, and Y. Maruyama, Enhancement of Fluorescence Efficiency for Single-Molecule Imaging, The 5th JRCAT International Symposium on Atom Technology, Tokyo, Japan, November 26, 1997
  160. Yogi, M. Ishikawa, and J. Y. Ye, Development of a Droplet Generator for Single-Molecule Fluorescence Imaging, The 15th Biotechnology Symposium, Tokyo, November 12, 1997.
  161. Ishikawa, O. Yogi, J. Y. Ye, and Y. Maruyama, Fluorescence Enhancement of Nucleic-Acid Bases for Single-Molecule Fluorescence Imaging, The 15th Biotechnology Symposium, Tokyo, November 12, 1997.
  162. Yogi, M. Ishikawa, and J. Y. Ye, Development of a Droplet Generator for Single-Molecule Imaging, The 58th Autumn Meeting of the Japan Society of Applied Physics, Akida, October 2-5, 1997.
  163. Sekine, Y. Hirai, J. Y. Ye, T. Hattori, H. Nakatsuka, Measurements of Fluorescence Lifetime of Dye Molecules Doped in Biological Tissues, The 52th Annual Meeting of Japanese Physics Society, Nagoya, March 28 – 31, 1997.
  164. Sekine, J. Y. Ye, T. Hattori, H. Nakatsuka Fluorescence Lifetime of Chromophores Doped in Biological Tissues, The 4th International Workshop on Femtosecond Technology, Tsukuba, Japan, February 13-14, 1997.
  165. Nakatsuka, J. Y. Ye, T. Hattori, Y. Maruyama, and M. Ishikawa, Microscopic Study of Glass Transition: A Time-Resolved Fluorescence Measurement of Doped Dye Molecules, Yukawa International Seminar 1996, Dynamics of Glass Transition and Related Topics, Kyoto, Japan, November 12-15, 1996.
  166. Sekine, J. Y. Ye, T. Hattori, H. Nakatsuka, Measurements of Microscopic Viscosity of Binary Liquids in the Phase, Transition Region Using Molecular Probe, The 1996 Autumn Meeting of Japanese Physical Society, Yamaguchi, October 2 -5, 1996.
  167. Y. Ye, Y. Maruyama and M. Ishikawa, T. Hattori, and H. Nakatsuka, Study of Glass Transition Using Fluorescence-Lifetime Measurement of a Molecular Probe, The 51th Annual Meeting of Japanese Physics Society, Kanazawa, March 31 – April 2, 1996.
  168. Y. Ye, T. Hattori, H. Nakatsuka, Y. Maruyama and M. Ishikawa, Torsional Dynamics of Malachite Green in Polybutadiene Melt, International Workshop on Femtosecond Technology, Tsukuba, Japan, February 21-22, 1996.
  169. Y. Ye, H. Inouye, H. Ueta, T. Hattori, H. Nakatsuka, Study of Phase Transition in Organic Glasses Using a Fluorescent Probe II, The 50th Annual Meeting of Japanese Physical Society, Yokohama, March 28 – 31, 1995.
  170. Inouye, J. Y. Ye, H. Ueta, T. Hattori, H. Nakatsuka, Study of Phase Transition in Organic Glasses Using a Fluorescent Probe I, The 1994 Autumn Meeting of Japanese Physical Society, Shizuoka, September 2 -5, 1994.
  171. M. Abedin, J. Y. Ye, H. Inouye, T. Hattori, and H. Nakatsuka, Local Dynamics in Solid Matrices Investigated by Malachite Green Optical Microprobes, Spectral Hole-Burning and Related Spectroscopies: Science and Applications, Tokyo, August 24-26, 1994.
  172. Y. Ye, K. M. Abedin, H. Inouye, T. Hattori, and H. Nakatsuka, Ultrafast Dynamics of Malachite Green in Porous Glasses, The 49th Annual Meeting of Japanese Physical Society, Fukuoka, March 28 – 31, 1994.
  173. M. Abedin, J. Y. Ye, H. Inouye, T. Hattori, and H. Nakatsuka Ultrafast Dynamics of Malachite Green Doped in Solid Matrices, The 48th Annual Meeting of Japanese Physical Society, Okayama, October 12 -15, 1993.
  174. Liu, G. S. Cheng, J. Y. Ye, and J. Y. Cai Diode Laser Probing of the Collisional Energy Transfer from Highly Excited NO2 to NH3 Molecules, CLEO/QELS’93 Conference, Baltimore, Maryland, May 2-7, 1993.
  175. Y. Ye, M. S. Zhan, and S. K. Zhou, Light Gain without Population Inversion due to the Level Dependence of Collision Cross Sections, The 1992 Shanghai International Symposium on Quantum Optics, March 29 – April 2, 1992, Proc. SPIE-Int. Soc. Opt. Eng. 1726, 532 (1992).
  176. Y. Ye, M. S. Zhan, and S. K. Zhou, A New Model of Light Amplification without Population Inversion, The Fifth National Quantum Optics Conference, Shanghai, March 26 – 28, 1992
  177. Y. Ye, L. S. Yang, and Y. Q. Lu, A Simplified Model on the Calculation of the Velocity of Light-Induced Drift, The Tenth National Laser Science Conference, Fuhehaote, August 12-15, 1990
  178. Y. Ye, Light-Induced Drift Effect of Gaseous Molecules, Conference on “Excellent Theses in Optics Branch of Academia Sinica”, Shanghai, October 1990.
  179. Y. Ye, L. S. Yang, and Y. Q. Lu, Entropy Change in the Light-Induced Drift Process, The Sixth Interdisciplinary Laser Science Conference, Minneapolis, Minnesota, September 16-19, 1990.
  180. Y. Ye, Y. Q. Lu, P. A. Huang, and Y. C. Zhang, A New Fluorescence Spectrum Study of N2O, The Forth International Laser Science Conference, Atlanta, Georgia, October 2-6, 1988.